As the storm approaches, Commander Kolya of the Genii, who has seized Atlantis, is about to shoot Dr. Weir. Suddenly, Dr. Rodney McKay steps in front of the gun and convinces Kolya that he and Weir are the only ones who can fix Grounding Station 3, the last of the four grounding stations that must be disabled so that lightning from the storm can be channeled into the shield generator, to power up the shield and protect Atlantis from being obliterated. Kolya spares their lives, but contacts Maj. John Sheppard over the radio and tells him that Weir is dead. Sheppard vows to kill Kolya. Meanwhile, on the mainland, Lt. Aiden Ford, Teyla and Dr. Carson Beckett are waiting out the storm in a Puddle Jumper. Suddenly, the wind stops and the sky clears. They are in the eye of the storm. Ford commands a reluctant and frightened Beckett to fly the Puddle Jumper straight up the eye, over the storm to Atlantis to help Sheppard. On Atlantis, a female Genii named Sora reports to Kolya that Sheppard has killed three more of their men. Weir and McKay, who are working to bypass the broken switch on the grounding station, overhear the conversation and try to stall the repair to give Sheppard more time. Kolya commands Sora to radio Chief Cowen, leader of the Genii, to send a full company of 60 men through the stargate, dashing Weir and McKay's hopes of rescue.